Domain ID e1oyrD2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 000071320
Type: Automatic domain
Parent: e1r6lA2
Range: D:1-150
Ligands: CD SO4
PDB: 1oyr
PDB Description: Ribonuclease PH
UniProt: P28619
Species: Bacillus subtilis

Structure of domain e1oyrD2

Domains in the same chain:

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e1oyrD2 D:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrD1 D:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e1oyrA2 A:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrA3 A:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oyrB2 B:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrB3 B:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oyrC2 C:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrC1 C:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oyrD2 D:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrD1 D:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oyrE2 E:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrE1 E:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e1oyrF2 F:1-150 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1oyrF1 F:151-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e1oyrD2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1oyrE2 D:X,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1oyrC2 D:x,y,z->C:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1oyrC1 D:x,y,z->C:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e1oyrB3 D:-X,Y-1/2,-Z+1/2->B:x,y,z Ribonuclease PH domain 2 Interaction Interface Pymol
e1oyrB2 D:-X,Y-1/2,-Z+1/2->B:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1oyrF2 D:X,Y,Z->F:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol