Domain ID e1p9uD1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: FMN-binding split barrel
  • F: Peptidase_C30
UID: 001103649
Type: Automatic domain
Parent: e2ducA2
Range: D:1-185
Ligands: MRD SO4
PDB: 1p9u
PDB Description: putative coronavirus nsp2 (3CL-PRO)
UniProt: P0C6Y5
Species:

Structure of domain e1p9uD1

Domains in the same chain:

e1p9uD1 D:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uD2 D:186-301 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain

Domains in the same PDB:

e1p9uA1 A:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uA2 A:186-299 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
e1p9uB1 B:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uB2 B:186-300 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
e1p9uC1 C:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uC2 C:186-300 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
e1p9uD1 D:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uD2 D:186-301 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
e1p9uE1 E:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uE2 E:186-299 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain
e1p9uF1 F:1-185 cradle loop barrel RIFT-related FMN-binding split barrel
e1p9uF2 F:186-300 Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain

Structural contacts of domain e1p9uD1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1p9uC1 D:x,y,z->C:X,Y,Z RIFT-related Interaction Interface Pymol
e1p9uC2 D:x,y,z->C:X,Y,Z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e1p9uE1 D:-X+1,Y-1/2,-Z+2->E:x,y,z RIFT-related Interaction Interface Pymol
e1p9uE2 D:-X+1,Y-1/2,-Z+2->E:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e1p9uB1 D:-X+2,Y-1/2,-Z+2->B:x,y,z RIFT-related Interaction Interface Pymol
e1p9uB2 D:-X+2,Y-1/2,-Z+2->B:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e1p9uF1 D:X-1,Y,Z->F:x,y,z RIFT-related Interaction Interface Pymol
e1p9uF2 D:-X+2,Y-1/2,-Z+2->F:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e1p9uA2 D:-X+2,Y-1/2,-Z+2->A:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e1p9uB2 D:-X+2,Y-1/2,-Z+1->B:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol