ECOD: domain e1pbyA5

Domain ID e1pbyA5

A: alpha arrays
X: Cytochrome c-like
H: Cytochrome c
T: Cytochrome c
F: Dehyd-heme_bind

UID:	000003360
Type:	Manual and representative domain
Range:	A:86-165
Ligands:	HEM
PDB:	1pby
PDB Description:	quinohemoprotein amine dehydrogenase 60 kDa subunit
UniProt:	Q8VUT0
Species:	Paracoccus denitrificans

Domain
In chain context
In PDB context

Structure of domain e1pbyA5

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e1pbyA4	A:1-85	Cytochrome c-like	Cytochrome c	Cytochrome c
e1pbyA5	A:86-165	Cytochrome c-like	Cytochrome c	Cytochrome c
e1pbyA1	A:166-273	Lipocalins/Streptavidin	Quinohemoprotein amine dehydrogenase A chain, domain 3-like	Quinohemoprotein amine dehydrogenase A chain, domain 3-like
e1pbyA2	A:274-351	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1pbyA3	A:352-489	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1pbyB1	B:1-337	beta-propeller-like	beta-propeller	7-bladed
e1pbyC1	C:1-79	Quinohemoprotein amine dehydrogenase C chain	Quinohemoprotein amine dehydrogenase C chain	Quinohemoprotein amine dehydrogenase C chain

Structural contacts of domain e1pbyA5 of H-group "Cytochrome c":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1pbyC1	A:X,Y,Z->C:x,y,z	Quinohemoprotein amine dehydrogenase C chain	Interaction Interface Pymol
e1pbyB1	A:X,Y,Z->B:x,y,z	beta-propeller	Interaction Interface Pymol
e1pbyB1	A:-Y+1,-X+1,-Z+1/2->B:x,y,z	beta-propeller	Interaction Interface Pymol
e1pbyA2	A:-X+3/2,Y-1/2,-Z+1/4->A:x,y,z	Immunoglobulin-related	Interaction Interface Pymol