| UID: | 000005817 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:4-77 |
| PDB: | 1pkp |
| PDB Description: | RIBOSOMAL PROTEIN S5 |
| UniProt: | P02357 |
| Hsap BLAST neighbor: | P15880 |
| Species: | Geobacillus stearothermophilus |
Structure of domain e1pkpA1
Domains in the same chain:
| e1pkpA1 | A:4-77 | dsRBD-like | dsRNA-binding domain-like | dsRNA-binding domain-like |
| e1pkpA2 | A:78-148 | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like |
Domains in the same PDB:
| e1pkpA1 | A:4-77 | dsRBD-like | dsRNA-binding domain-like | dsRNA-binding domain-like |
| e1pkpA2 | A:78-148 | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like |
Structural contacts of domain e1pkpA1 of H-group "dsRNA-binding domain-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1pkpA1 | A:x,y,z->A:X-Y,-Y,-Z+1/3 | dsRNA-binding domain-like | Interaction Interface Pymol |
| e1pkpA2 | A:x,y,z->A:X-Y,-Y,-Z+1/3 | Ribosomal protein S5 domain 2-like | Interaction Interface Pymol |
| e1pkpA2 | A:X-Y,-Y,-Z+1/3->A:x,y,z | Ribosomal protein S5 domain 2-like | Interaction Interface Pymol |
| e1pkpA1 | A:X-Y,-Y,-Z+1/3->A:x,y,z | dsRNA-binding domain-like | Interaction Interface Pymol |
| e1pkpA1 | A:x,y,z->A:Y,X-1,-Z | dsRNA-binding domain-like | Interaction Interface Pymol |
| e1pkpA2 | A:x,y,z->A:Y,X-1,-Z | Ribosomal protein S5 domain 2-like | Interaction Interface Pymol |
| e1pkpA2 | A:Y,X-1,-Z->A:x,y,z | Ribosomal protein S5 domain 2-like | Interaction Interface Pymol |
| e1pkpA1 | A:Y,X-1,-Z->A:x,y,z | dsRNA-binding domain-like | Interaction Interface Pymol |
