Domain ID e1pvoD3

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ATP-synt_ab
UID: 000102366
Type: Automatic domain
Parent: e2jdiA3
Range: D:129-417
Ligands: ANP
PDB: 1pvo
PDB Description: Transcription termination factor rho
UniProt: P0AG30
Species: Escherichia coli

Structure of domain e1pvoD3

Domains in the same chain:

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e1pvoD2 D:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1pvoD1 D:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoD3 D:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e1pvoA2 A:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1pvoA1 A:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoA3 A:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1pvoB2 B:51-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoB1 B:127-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1pvoC2 C:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1pvoC1 C:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoC3 C:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1pvoD2 D:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1pvoD1 D:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoD3 D:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1pvoE6 E:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1pvoE5 E:48-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoE4 E:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1pvoF2 F:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1pvoF1 F:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1pvoF3 F:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e1pvoD3 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1pvoC3 D:x,y,z->C:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1pvoE4 D:X,Y,Z->E:x,y,z P-loop domains-related Interaction Interface Pymol
e1pvoE6 D:X,Y,Z->E:x,y,z LEM/SAP HeH motif Interaction Interface Pymol
e1pvoC3 D:x,y,z->C:-X,Y,-Z+1 P-loop domains-related Interaction Interface Pymol