ECOD: domain e1pybA1

Domain ID e1pybA1

A: beta barrels
X: OB-fold
H: Nucleic acid-binding proteins
T: Nucleic acid-binding proteins
F: tRNA_bind

UID:	000000322
Type:	Manual and representative domain
Range:	A:5-111
PDB:	1pyb
PDB Description:	tRNA-binding protein Trbp111
UniProt:	O66738
Hsap BLAST neighbor:	P54577
Species:	Aquifex aeolicus

Domains in the same chain:

Download Pymol

e1pybA1	A:5-111	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

e1pybA1	A:5-111	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1pybB1	B:205-311	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1pybC1	C:5-111	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1pybD1	D:205-311	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Structural contacts of domain e1pybA1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1pybB1	A:X,Y,Z->B:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e1pybC1	A:x,y,z->C:-X+1,Y-1,-Z+1	Nucleic acid-binding proteins	Interaction Interface Pymol
e1pybD1	A:x,y,z->D:-X+1,Y-1,-Z+1	Nucleic acid-binding proteins	Interaction Interface Pymol
e1pybD1	A:-X+1,Y,-Z+1->D:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol
e1pybD1	A:X-1/2,Y+1/2,Z->D:x,y,z	Nucleic acid-binding proteins	Interaction Interface Pymol