Domain ID e1q8iA3

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: Unmapped domains
UID: 000004201
Type: Manual and representative domain
Range: A:639-684,A:745-783
PDB: 1q8i
PDB Description: DNA polymerase II
UniProt: P21189
Species: Escherichia coli

Structure of domain e1q8iA3

Domains in the same chain:

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e1q8iA1 A:2-39,A:109-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1q8iA5 A:40-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1q8iA6 A:150-389 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q8iA4 A:390-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q8iA2 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q8iA3 A:639-684,A:745-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1q8iA1 A:2-39,A:109-149 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1q8iA5 A:40-108 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e1q8iA6 A:150-389 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q8iA4 A:390-464,A:508-636 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q8iA2 A:465-507 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q8iA3 A:639-684,A:745-783 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1q8iA3 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1q8iA5 A:x,y,z->A:X,Y,Z-1 Family B DNA polymerase insertion domain Interaction Interface Pymol
e1q8iA1 A:x,y,z->A:X,Y,Z-1 Nucleic acid-binding proteins Interaction Interface Pymol
e1q8iA6 A:x,y,z->A:X,Y,Z-1 Ribonuclease H-like Interaction Interface Pymol