Domain ID e1q9xA2

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: Unmapped domains
UID: 000057808
Type: Automatic domain
Parent: e1ih7A2
Range: A:732-902
PDB: 1q9x
PDB Description: DNA polymerase
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e1q9xA2

Domains in the same chain:

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e1q9xA4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q9xA3 A:376-467,A:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q9xA1 A:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q9xA2 A:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1q9xA4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q9xA3 A:376-467,A:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q9xA1 A:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q9xA2 A:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e1q9xB4 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q9xB3 B:376-467,B:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q9xB1 B:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q9xB2 B:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e1q9xC4 C:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q9xC3 C:376-467,C:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q9xC1 C:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q9xC2 C:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e1q9xD4 D:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1q9xD3 D:376-467,D:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1q9xD1 D:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1q9xD2 D:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1q9xA2 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1q9xC3 A:x,y,z->C:-X+1,Y-1/2,-Z+2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1q9xA4 A:x,y,z->A:-X+1,Y-1/2,-Z+2 Ribonuclease H-like Interaction Interface Pymol
e1q9xC2 A:x,y,z->C:-X+2,Y-1/2,-Z+2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol