Domain ID e1r4mJ1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: ubiquitin
UID: 000072081
Type: Automatic domain
Parent: e1v5oA1
Range: J:101-176
Ligands: ZN
PDB: 1r4m
PDB Description: Ubiquitin-like protein NEDD8
UniProt: Q15843
Hsap BLAST neighbor: Q15843
Species: Homo sapiens

Structure of domain e1r4mJ1

Domains in the same chain:

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e1r4mJ1 J:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e1r4mA1 A:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mB4 B:12-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mB1 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4mB3 B:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4mC1 C:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mD4 D:12-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mD1 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4mD3 D:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4mE1 E:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mF4 F:12-210,F:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mF2 F:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4mF3 F:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4mG1 G:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mH4 H:12-210,H:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4mH1 H:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4mH3 H:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4mI1 I:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e1r4mJ1 J:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e1r4mK1 K:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e1r4mL1 L:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e1r4mJ1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1r4mD4 J:x,y,z->D:X,Y,Z Rossmann-related Interaction Interface Pymol
e1r4mC1 J:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e1r4mD1 J:X-1/2,-Y+1/2,-Z->D:x,y,z Catalytic cysteine domain in ubiquitin-activating enzyme Interaction Interface Pymol