Domain ID e1r4nK1

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  • A: a+b two layers
  • X: beta-Grasp
  • H: Ubiquitin-related
  • T: Ubiquitin-like
  • F: ubiquitin
UID: 000072069
Type: Automatic domain
Parent: e1v5oA1
Range: K:101-176
Ligands: ATP
DrugDomain: DB00171
PDB: 1r4n
PDB Description: Ubiquitin-like protein NEDD8
UniProt: Q15843
Hsap BLAST neighbor: Q15843
Species: Homo sapiens

Structure of domain e1r4nK1

Domains in the same chain:

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e1r4nK1 K:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Domains in the same PDB:

e1r4nA1 A:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nB4 B:12-210,B:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nB2 B:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4nB3 B:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4nC1 C:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nD1 D:12-210,D:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nD2 D:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4nD3 D:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4nE1 E:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nF2 F:12-210,F:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nF4 F:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4nF3 F:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4nG1 G:6-534 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nH2 H:12-210,H:289-346 Rossmann-like Rossmann-related Activating enzymes of the ubiquitin-like proteins
e1r4nH4 H:211-288 Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme Catalytic cysteine domain in ubiquitin-activating enzyme
e1r4nH3 H:347-917 beta-Grasp E2-binding domain of E1 E2-binding domain of E1
e1r4nI1 I:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e1r4nJ1 J:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e1r4nK1 K:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like
e1r4nL1 L:101-176 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e1r4nK1 of H-group "Ubiquitin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1r4nF2 K:x,y,z->F:X,Y,Z Rossmann-related Interaction Interface Pymol
e1r4nE1 K:x,y,z->E:X,Y,Z Rossmann-related Interaction Interface Pymol
e1r4nA1 K:X-1/2,-Y+3/2,-Z->A:x,y,z Rossmann-related Interaction Interface Pymol