Domain ID e1rlvB2

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  • A: a+b two layers
  • X: Homing endonucleases-like
  • H: tRNA-intron endonuclease N-terminal domain-like
  • T: tRNA-intron endonuclease N-terminal domain-like
  • F: Unmapped domains
UID: 000067914
Type: Automatic domain
Parent: e1r0vA1
Range: B:3-60
PDB: 1rlv
PDB Description: Putative tRNA-intron endonuclease
UniProt: O29362
Species: Archaeoglobus fulgidus

Structure of domain e1rlvB2

Domains in the same chain:

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e1rlvB2 B:3-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1rlvB3 B:62-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1rlvB1 B:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1rlvB4 B:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e1rlvA2 A:3-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1rlvA3 A:62-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1rlvA1 A:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1rlvA4 A:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1rlvB2 B:3-60 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1rlvB3 B:62-139 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e1rlvB1 B:140-214 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e1rlvB4 B:215-305 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e1rlvB2 of H-group "tRNA-intron endonuclease N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1rlvA1 B:x,y,z->A:X,Y,Z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol
e1rlvA3 B:x,y,z->A:Y,X-1,-Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e1rlvA2 B:x,y,z->A:Y,X-1,-Z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol