Domain ID e1rm6D1

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  • A: a+b two layers
  • X: MocoBD/DmpA-related
  • H: MocoBD/DmpA-related
  • T: Molybdenum cofactor-binding domain
  • F: MoCoBD_1
UID: 001874546
Type: Automatic domain
Parent: e1rm6A3
Range: D:134-401
Ligands: CL EPE FES K PCD SO4
PDB: 1rm6
PDB Description: 4-HYDROXYBENZOYL-COA REDUCTASE ALPHA SUBUNIT
UniProt: O33819
Hsap BLAST neighbor: Q06278
Species: Thauera aromatica

Structure of domain e1rm6D1

Domains in the same chain:

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e1rm6D2 D:9-133 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1rm6D1 D:134-401 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1rm6D3 D:402-768 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain

Domains in the same PDB:

e1rm6A2 A:9-133 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1rm6A3 A:134-401 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1rm6A4 A:402-769 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1rm6B3 B:1-121,B:158-216 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1rm6B4 B:122-157 Fe-S cluster binding domain in some xanthine oxidase family enzymes Fe-S cluster binding domain in some xanthine oxidase family enzymes Fe-S cluster binding domain in some xanthine oxidase family enzymes
e1rm6B1 B:217-323 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1rm6C2 C:1-81 beta-Grasp Ubiquitin-related Ubiquitin-like
e1rm6C1 C:82-157 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like
e1rm6D2 D:9-133 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid CO dehydrogenase molybdoprotein N-domain-like
e1rm6D1 D:134-401 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1rm6D3 D:402-768 MocoBD/DmpA-related MocoBD/DmpA-related Molybdenum cofactor-binding domain
e1rm6E2 E:1-216 FAD-binding domain-like FAD-binding domain FAD-binding domain
e1rm6E1 E:217-323 FAD-linked reductases, C-terminal domain-like SufE/NifU SufE/NifU
e1rm6F2 F:1-81 beta-Grasp Ubiquitin-related Ubiquitin-like
e1rm6F1 F:82-157 CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like CO dehydrogenase ISP C-domain like

Structural contacts of domain e1rm6D1 of H-group "MocoBD/DmpA-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1rm6A4 D:x,y,z->A:X,Y,Z MocoBD/DmpA-related Interaction Interface Pymol
e1rm6A2 D:x,y,z->A:X,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e1rm6F1 D:X,Y,Z->F:x,y,z CO dehydrogenase ISP C-domain like Interaction Interface Pymol
e1rm6F2 D:X,Y,Z->F:x,y,z Ubiquitin-related Interaction Interface Pymol
e1rm6E2 D:X,Y,Z->E:x,y,z FAD-binding domain Interaction Interface Pymol
e1rm6C1 D:X,Y,Z->C:x,y,z CO dehydrogenase ISP C-domain like Interaction Interface Pymol
e1rm6B3 D:x,y,z->B:-X+1,Y-1/2,-Z+3/2 FAD-binding domain Interaction Interface Pymol
e1rm6E2 D:-X+1/2,-Y,Z-1/2->E:x,y,z FAD-binding domain Interaction Interface Pymol