ECOD: domain e1rr8C8

Domain ID e1rr8C8

A: beta complex topology
X: Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
H: Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
T: Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
F: Topoisom_I_N

UID:	001176181
Type:	Automatic domain
Parent:	e1oisA1
Range:	C:201-230,C:320-431
Ligands:	TTG
DrugDomain:	DB01030
PDB:	1rr8
PDB Description:	DNA topoisomerase I
UniProt:	P11387
Hsap BLAST neighbor:	P11387
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1rr8C8

Domains in the same chain:

Download Pymol

e1rr8C8	C:201-230,C:320-431	Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
e1rr8C7	C:231-319	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
e1rr8C5	C:431-584	HTH	HTH	DNA breaking-rejoining enzymes
e1rr8C6	C:585-636,C:708-765	HTH	HTH	DNA breaking-rejoining enzymes

Domains in the same PDB:

e1rr8C8	C:201-230,C:320-431	Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
e1rr8C7	C:231-319	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
e1rr8C5	C:431-584	HTH	HTH	DNA breaking-rejoining enzymes
e1rr8C6	C:585-636,C:708-765	HTH	HTH	DNA breaking-rejoining enzymes

Structural contacts of domain e1rr8C8 of H-group "Beta-strand domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1rr8C7	C:X-1,Y,Z->C:x,y,z	Alpha-helical domain in eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment	Interaction Interface Pymol
e1rr8C6	C:x,y,z->C:-X+1,Y-1/2,-Z+1	HTH	Interaction Interface Pymol