ECOD: domain e1rvyB3

Domain ID e1rvyB3

A: a/b three-layered sandwiches
X: PLP-dependent transferases
H: PLP-dependent transferases
T: PLP-dependent transferases
F: SHMT

UID:	001194081
Type:	Automatic domain
Parent:	e1kl1A2
Range:	B:15-321
Ligands:	PLG PLP PO4
PDB:	1rvy
PDB Description:	Serine hydroxymethyltransferase, cytosolic
UniProt:	P07511
Hsap BLAST neighbor:	P34896
Species:	Oryctolagus cuniculus

Domains in the same chain:

Download Pymol

e1rvyB3	B:15-321	PLP-dependent transferases	PLP-dependent transferases	PLP-dependent transferases
e1rvyB2	B:322-484	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases

Domains in the same PDB:

e1rvyA3	A:15-321	PLP-dependent transferases	PLP-dependent transferases	PLP-dependent transferases
e1rvyA2	A:322-484	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases
e1rvyB3	B:15-321	PLP-dependent transferases	PLP-dependent transferases	PLP-dependent transferases
e1rvyB2	B:322-484	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases	C-terminal domain in some PLP-dependent transferases

Structural contacts of domain e1rvyB3 of H-group "PLP-dependent transferases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1rvyA3	B:x,y,z->A:X,Y,Z	PLP-dependent transferases	Interaction Interface Pymol
e1rvyA2	B:x,y,z->A:X,Y,Z	C-terminal domain in some PLP-dependent transferases	Interaction Interface Pymol
e1rvyB3	B:x,y,z->B:Y,X,-Z+1	PLP-dependent transferases	Interaction Interface Pymol
e1rvyB3	B:Y,X,-Z+1->B:x,y,z	PLP-dependent transferases	Interaction Interface Pymol
e1rvyA2	B:-Y+3/2,X+1/2,Z+1/4->A:x,y,z	C-terminal domain in some PLP-dependent transferases	Interaction Interface Pymol
e1rvyB3	B:x,y,z->B:-Y+1,-X+1,-Z+1/2	PLP-dependent transferases	Interaction Interface Pymol
e1rvyB3	B:-Y+1,-X+1,-Z+1/2->B:x,y,z	PLP-dependent transferases	Interaction Interface Pymol