ECOD: domain e1s3rA1

Domain ID e1s3rA1

A: beta sandwiches
X: Immunoglobulin-like beta-sandwich
H: Perfringolysin O beta sandwich domain
T: Perfringolysin O beta sandwich domain
F: Thiol_cytolys_C

UID:	001112953
Type:	Automatic domain
Parent:	e1pfoA2
Range:	A:418-528
Ligands:	SO4
PDB:	1s3r
PDB Description:	intermedilysin
UniProt:	Q9LCB8
Species:	Streptococcus intermedius

Domains in the same chain:

Download Pymol

e1s3rA2	A:56-417	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e1s3rA1	A:418-528	Immunoglobulin-like beta-sandwich	Perfringolysin O beta sandwich domain	Perfringolysin O beta sandwich domain

Domains in the same PDB:

e1s3rA2	A:56-417	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e1s3rA1	A:418-528	Immunoglobulin-like beta-sandwich	Perfringolysin O beta sandwich domain	Perfringolysin O beta sandwich domain
e1s3rB2	B:56-417	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains
e1s3rB1	B:418-528	Immunoglobulin-like beta-sandwich	Perfringolysin O beta sandwich domain	Perfringolysin O beta sandwich domain

Structural contacts of domain e1s3rA1 of H-group "Perfringolysin O beta sandwich domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1s3rB2	A:X,Y,Z->B:x,y,z	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Interaction Interface Pymol
e1s3rA2	A:x,y,z->A:-X+1/2,Y-1/2,-Z+1	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Interaction Interface Pymol
e1s3rA2	A:x,y,z->A:-X,-Y,Z	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Interaction Interface Pymol
e1s3rA2	A:-X,-Y,Z->A:x,y,z	Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains	Interaction Interface Pymol