Domain ID e1s3sB3

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  • A: a+b two layers
  • X: Cdc48 domain 2-like
  • H: Cdc48 domain 2-like
  • T: Cdc48 domain 2-like
  • F: CDC48_2
UID: 000071114
Type: Automatic domain
Parent: e1cr5A2
Range: B:107-200
PDB: 1s3s
PDB Description: TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE (TER ATPASE) (15S MG(2+)- ATPASE P97 SUBUNIT) (VALOSIN CONTAINING PROTEIN) (VCP) [CONTAINS: VALOSIN]
UniProt: Q01853
Hsap BLAST neighbor: P55072
Species: Mus musculus

Structure of domain e1s3sB3

Domains in the same chain:

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e1s3sB1 B:23-106 cradle loop barrel RIFT-related double psi
e1s3sB3 B:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sB2 B:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sB4 B:372-458 Histone-like Histone-related AAA+ ATPase lid domain

Domains in the same PDB:

e1s3sA8 A:23-106 cradle loop barrel RIFT-related double psi
e1s3sA6 A:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sA5 A:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sA7 A:372-458 Histone-like Histone-related AAA+ ATPase lid domain
e1s3sB1 B:23-106 cradle loop barrel RIFT-related double psi
e1s3sB3 B:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sB2 B:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sB4 B:372-458 Histone-like Histone-related AAA+ ATPase lid domain
e1s3sC8 C:22-106 cradle loop barrel RIFT-related double psi
e1s3sC6 C:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sC5 C:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sC7 C:372-458 Histone-like Histone-related AAA+ ATPase lid domain
e1s3sD8 D:23-106 cradle loop barrel RIFT-related double psi
e1s3sD6 D:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sD5 D:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sD7 D:372-458 Histone-like Histone-related AAA+ ATPase lid domain
e1s3sE8 E:23-106 cradle loop barrel RIFT-related double psi
e1s3sE6 E:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sE5 E:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sE7 E:372-458 Histone-like Histone-related AAA+ ATPase lid domain
e1s3sF8 F:18-106 cradle loop barrel RIFT-related double psi
e1s3sF6 F:107-200 Cdc48 domain 2-like Cdc48 domain 2-like Cdc48 domain 2-like
e1s3sF5 F:201-371 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1s3sF7 F:372-458 Histone-like Histone-related AAA+ ATPase lid domain
e1s3sG1 G:253-370 beta-Grasp Ubiquitin-related Ubiquitin-like
e1s3sH1 H:282-370 beta-Grasp Ubiquitin-related Ubiquitin-like
e1s3sI2 I:277-287,I:314-326 beta-Grasp Ubiquitin-related Ubiquitin-like

Structural contacts of domain e1s3sB3 of H-group "Cdc48 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s3sF5 B:X,Y,Z->F:x,y,z P-loop domains-related Interaction Interface Pymol
e1s3sH1 B:X,Y,Z->H:x,y,z Ubiquitin-related Interaction Interface Pymol
e1s3sD7 B:X-Y,X,Z-1/6->D:x,y,z Histone-related Interaction Interface Pymol