Domain ID e1s5lD1

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  • A: alpha bundles
  • X: Bacterial photosystem II reaction centre L and M subunits-like
  • H: Bacterial photosystem II reaction centre L and M subunits-like
  • T: Bacterial photosystem II reaction centre L and M subunits-like
  • F: Photo_RC
UID: 000262613
Type: Automatic domain
Parent: e2j8cL1
Range: D:14-352
Ligands: BCR BCT CLA FE LMT PHO PL9
PDB: 1s5l
PDB Description: photosystem II reaction center D2 protein
UniProt: Q8CM25
Species: Thermosynechococcus elongatus

Structure of domain e1s5lD1

Domains in the same chain:

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e1s5lD1 D:14-352 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like

Domains in the same PDB:

e1s5la1 a:2012-2344 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e1s5lA1 A:12-344 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e1s5lb1 b:2006-2328,b:2445-2481 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e1s5lb2 b:2329-2444 Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain
e1s5lB1 B:6-328,B:445-481 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e1s5lB2 B:329-444 Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain Photosystem II antenna protein PsbB insertion domain
e1s5lc1 c:2036-2456 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e1s5lC1 C:36-456 Photosystem II antenna protein-like Photosystem II antenna protein-like Photosystem II antenna protein-like
e1s5ld1 d:2014-2352 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e1s5lD1 D:14-352 Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like Bacterial photosystem II reaction centre L and M subunits-like
e1s5le1 e:2008-2083 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e1s5lE1 E:8-83 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e1s5lf1 f:2012-2044 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e1s5lF1 F:12-44 Cytochrome b559 subunits Cytochrome b559 subunits Cytochrome b559 subunits
e1s5lh1 h:2000-2052 Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH
e1s5lH1 H:13-65 Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH Photosystem II 10 kDa phosphoprotein PsbH
e1s5li1 i:2001-2038 Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI
e1s5lI1 I:1-38 Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI Photosystem II reaction center protein I, PsbI
e1s5lj1 j:2003-2040 Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ
e1s5lJ1 J:3-40 Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ Photosystem II reaction center protein J, PsbJ
e1s5lk1 k:2001-2037 Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK
e1s5lK1 K:1-37 Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK Photosystem II reaction center protein K, PsbK
e1s5ll1 l:2001-2037 Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL
e1s5lL1 L:1-37 Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL Photosystem II reaction center protein L, PsbL
e1s5lm1 m:2001-2030 Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM
e1s5lM1 M:1-30 Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM Photosystem II reaction center protein M, PsbM
e1s5lo1 o:2001-2246 Outer membrane meander beta-barrels OMPA-like OMPA-like
e1s5lO1 O:1-246 Outer membrane meander beta-barrels OMPA-like OMPA-like
e1s5lt1 t:2001-2031 Photosystem II reaction center protein T, PsbT Photosystem II reaction center protein T, PsbT Photosystem II reaction center protein T, PsbT
e1s5lT1 T:1-31 Photosystem II reaction center protein T, PsbT Photosystem II reaction center protein T, PsbT Photosystem II reaction center protein T, PsbT
e1s5lu1 u:2030-2134 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1s5lU1 U:30-134 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e1s5lv1 v:2001-2137 Cytochrome c-like Cytochrome c Cytochrome c
e1s5lV1 V:1-137 Cytochrome c-like Cytochrome c Cytochrome c
e1s5lx1 x:2011-2050 Photosystem II PsbX protein Photosystem II PsbX protein Photosystem II PsbX protein
e1s5lX1 X:11-50 Photosystem II PsbX protein Photosystem II PsbX protein Photosystem II PsbX protein
e1s5lz1 z:2001-2058 PsbZ-like PsbZ-like PsbZ-like
e1s5lZ1 Z:1-58 PsbZ-like PsbZ-like PsbZ-like

Structural contacts of domain e1s5lD1 of H-group "Bacterial photosystem II reaction centre L and M subunits-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s5lA1 D:x,y,z->A:X,Y,Z Bacterial photosystem II reaction centre L and M subunits-like Interaction Interface Pymol
e1s5lB2 D:x,y,z->B:X,Y,Z Photosystem II antenna protein PsbB insertion domain Interaction Interface Pymol
e1s5lB1 D:x,y,z->B:X,Y,Z Photosystem II antenna protein-like Interaction Interface Pymol
e1s5lE1 D:X,Y,Z->E:x,y,z Cytochrome b559 subunits Interaction Interface Pymol
e1s5lO1 D:X,Y,Z->O:x,y,z OMPA-like Interaction Interface Pymol
e1s5lX1 D:X,Y,Z->X:x,y,z Photosystem II PsbX protein Interaction Interface Pymol
e1s5lF1 D:X,Y,Z->F:x,y,z Cytochrome b559 subunits Interaction Interface Pymol
e1s5lL1 D:X,Y,Z->L:x,y,z Photosystem II reaction center protein L, PsbL Interaction Interface Pymol
e1s5lT1 D:X,Y,Z->T:x,y,z Photosystem II reaction center protein T, PsbT Interaction Interface Pymol
e1s5lH1 D:X,Y,Z->H:x,y,z Photosystem II 10 kDa phosphoprotein PsbH Interaction Interface Pymol
e1s5lC1 D:x,y,z->C:X,Y,Z Photosystem II antenna protein-like Interaction Interface Pymol
e1s5lU1 D:X,Y,Z->U:x,y,z SAM/DNA-glycosylase Interaction Interface Pymol
e1s5lM1 D:X,Y,Z->M:x,y,z Photosystem II reaction center protein M, PsbM Interaction Interface Pymol
e1s5lV1 D:X,Y,Z->V:x,y,z Cytochrome c Interaction Interface Pymol
e1s5lI1 D:X,Y,Z->I:x,y,z Photosystem II reaction center protein I, PsbI Interaction Interface Pymol