Domain ID e1s77D4

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  • A: alpha arrays
  • X: inserted helical bundle subdomain in T7 RNA polymerase
  • H: inserted helical bundle subdomain in T7 RNA polymerase
  • T: inserted helical bundle subdomain in T7 RNA polymerase
  • F: RNA_pol
UID: 001878162
Type: Automatic domain
Parent: e1mswD3
Range: D:449-528
Ligands: POP
PDB: 1s77
PDB Description: DNA-directed RNA polymerase
UniProt: P00573
Hsap BLAST neighbor: O00411
Species: Enterobacteria phage T7

Structure of domain e1s77D4

Domains in the same chain:

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e1s77D5 D:12-262 HTH HTH HTH in T7 RNA polymerase
e1s77D6 D:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1s77D4 D:449-528 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1s77D2 D:529-552,D:780-883 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s77D1 D:553-779 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1s77D5 D:12-262 HTH HTH HTH in T7 RNA polymerase
e1s77D6 D:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1s77D4 D:449-528 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e1s77D2 D:529-552,D:780-883 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s77D1 D:553-779 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e1s77D4 of H-group "inserted helical bundle subdomain in T7 RNA polymerase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s77D2 D:x,y,z->D:X,-Y,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s77D4 D:x,y,z->D:X,-Y,-Z+1 inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e1s77D4 D:X,-Y,-Z+1->D:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e1s77D2 D:X,-Y,-Z+1->D:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s77D2 D:x,y,z->D:-X-1/2,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s77D1 D:x,y,z->D:-X-1/2,Y-1/2,-Z+1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol