Domain ID e1s78B6

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  • A: few secondary structure elements
  • X: EGF-like
  • H: Growth factor receptor domain
  • T: Growth factor receptor domain
  • F: Furin-like
UID: 001168866
Type: Automatic domain
Parent: e1igrA3
Range: B:165-321
Ligands: NAG
PDB: 1s78
PDB Description: RECEPTOR PROTEIN-TYROSINE KINASE ERBB-2
UniProt: P04626
Hsap BLAST neighbor: P04626
Species: Homo sapiens

Structure of domain e1s78B6

Domains in the same chain:

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e1s78B7 B:1-167 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e1s78B6 B:165-321 EGF-like Growth factor receptor domain Growth factor receptor domain
e1s78B5 B:322-487 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e1s78B8 B:488-577 EGF-like Growth factor receptor domain Growth factor receptor domain

Domains in the same PDB:

e1s78A1 A:1-164 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e1s78A3 A:166-321 EGF-like Growth factor receptor domain Growth factor receptor domain
e1s78A2 A:323-487 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e1s78A4 A:489-564 EGF-like Growth factor receptor domain Growth factor receptor domain
e1s78B7 B:1-167 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e1s78B6 B:165-321 EGF-like Growth factor receptor domain Growth factor receptor domain
e1s78B5 B:322-487 Single-stranded right-handed beta-helix Leucine-rich repeats Leucine-rich repeats
e1s78B8 B:488-577 EGF-like Growth factor receptor domain Growth factor receptor domain
e1s78C1 C:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78C2 C:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78D1 D:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78D2 D:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78E1 E:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78E2 E:108-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78F1 F:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1s78F2 F:114-216 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e1s78B6 of H-group "Growth factor receptor domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s78F1 B:X,Y,Z->F:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1s78A1 B:x,y,z->A:X,Y,Z Leucine-rich repeats Interaction Interface Pymol
e1s78E1 B:X,Y,Z->E:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1s78F2 B:x,y,z->F:X-1/2,-Y+1/2,-Z+5/4 Immunoglobulin-related Interaction Interface Pymol
e1s78D2 B:-Y+1/2,X+1/2,Z-1/4->D:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1s78A2 B:x,y,z->A:X-1/2,-Y+1/2,-Z+5/4 Leucine-rich repeats Interaction Interface Pymol