Domain ID e1s9eA2

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: RVT_1
UID: 000066367
Type: Automatic domain
Parent: e1ztwA1
Range: A:5-241
Ligands: ADB
PDB: 1s9e
PDB Description: POL polyprotein [Contains:Reverse transcriptase]
UniProt: P03366
Hsap BLAST neighbor: P63135
Species: Human immunodeficiency virus 1

Structure of domain e1s9eA2

Domains in the same chain:

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e1s9eA2 A:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s9eA1 A:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1s9eA4 A:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1s9eA3 A:431-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e1s9eA2 A:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s9eA1 A:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1s9eA4 A:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1s9eA3 A:431-552 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1s9eB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1s9eB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1s9eB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1s9eA2 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1s9eB2 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s9eA3 A:x,y,z->A:-X+3/2,Y-1/2,-Z+2 Ribonuclease H-like Interaction Interface Pymol
e1s9eA1 A:-X+3/2,Y-1/2,-Z+2->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1s9eB2 A:x,y,z->B:-X+3/2,Y-1/2,-Z+1 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1s9eB2 A:x,y,z->B:X,Y-1,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol