ECOD: domain e1sc5A3

Domain ID e1sc5A3

A: alpha complex topology
X: Sigma2 domain-like
H: Sigma2 domain of RNA polymerase sigma factors
T: Sigma2 domain of RNA polymerase sigma factors
F: Sigma70_r2

UID:	000061902
Type:	Automatic domain
Parent:	e1or7A2
Range:	A:2-86
PDB:	1sc5
PDB Description:	RNA polymerase sigma factor FliA
UniProt:	O67268
Species:	Aquifex aeolicus

Domain
In chain context
In PDB context

Structure of domain e1sc5A3

Domains in the same chain:

Download Pymol

e1sc5A3	A:2-86	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e1sc5A1	A:87-163	HTH	HTH	tri-helical
e1sc5A2	A:168-233	HTH	HTH	tri-helical

Domains in the same PDB:

e1sc5A3	A:2-86	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e1sc5A1	A:87-163	HTH	HTH	tri-helical
e1sc5A2	A:168-233	HTH	HTH	tri-helical
e1sc5B1	B:3-88	Anti-sigma factor FlgM	Anti-sigma factor FlgM	Anti-sigma factor FlgM

Structural contacts of domain e1sc5A3 of H-group "Sigma2 domain of RNA polymerase sigma factors":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1sc5B1	A:X,Y,Z->B:x,y,z	Anti-sigma factor FlgM	Interaction Interface Pymol
e1sc5A2	A:Y,X-1,-Z->A:x,y,z	HTH	Interaction Interface Pymol
e1sc5A1	A:Y,X-1,-Z->A:x,y,z	HTH	Interaction Interface Pymol
e1sc5B1	A:X-Y,-Y,-Z+1/3->B:x,y,z	Anti-sigma factor FlgM	Interaction Interface Pymol