Domain ID e1sl0C4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: RNase_H_2
UID: 000115093
Type: Automatic domain
Parent: e1x9mA4
Range: C:1-210
Ligands: MG
PDB: 1sl0
PDB Description: DNA polymerase
UniProt: P00581
Species: Enterobacteria phage T7

Structure of domain e1sl0C4

Domains in the same chain:

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e1sl0C4 C:1-210 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1sl0C2 C:211-295,C:316-450 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1sl0C5 C:451-478,C:592-704 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1sl0C1 C:479-591 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1sl0A4 A:1-210 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1sl0A2 A:211-295,A:316-450 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1sl0A5 A:451-478,A:592-704 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1sl0A1 A:479-591 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1sl0B1 B:3-107 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e1sl0C4 C:1-210 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1sl0C2 C:211-295,C:316-450 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1sl0C5 C:451-478,C:592-704 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1sl0C1 C:479-591 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1sl0D1 D:3-107 Thioredoxin-like Thioredoxin-like Thioredoxin-like

Structural contacts of domain e1sl0C4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1sl0A1 C:x,y,z->A:X,Y,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e1sl0C5 C:X-1,Y,Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1sl0D1 C:-X,Y-1/2,-Z+1->D:x,y,z Thioredoxin-like Interaction Interface Pymol
e1sl0C2 C:-X,Y-1/2,-Z+1->C:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e1sl0C2 C:-X+1,Y-1/2,-Z+1->C:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol