Domain ID e1sqbB2

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  • A: a+b two layers
  • X: LuxS, MPP, ThrRS/AlaRS common domain
  • H: LuxS, MPP, ThrRS/AlaRS common domain
  • T: LuxS/MPP-like metallohydrolase
  • F: Peptidase_M16_C
UID: 000067323
Type: Automatic domain
Parent: e1hr6A2
Range: B:236-439
PDB: 1sqb
PDB Description: UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2, MITOCHONDRIAL
UniProt: P23004
Hsap BLAST neighbor: P22695
Species: Bos taurus

Structure of domain e1sqbB2

Domains in the same chain:

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e1sqbB1 B:17-235 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e1sqbB2 B:236-439 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase

Domains in the same PDB:

e1sqbA1 A:2-233 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e1sqbA2 A:234-442 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e1sqbB1 B:17-235 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e1sqbB2 B:236-439 LuxS, MPP, ThrRS/AlaRS common domain LuxS, MPP, ThrRS/AlaRS common domain LuxS/MPP-like metallohydrolase
e1sqbC2 C:15-260 Transmembrane heme-binding four-helical bundle Transmembrane heme-binding four-helical bundle Transmembrane di-heme cytochromes
e1sqbC1 C:261-379 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqbD1 D:1-195 Cytochrome c-like Cytochrome c Cytochrome c
e1sqbD2 D:196-241 cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor cytochrome c1 transmembrane anchor
e1sqbE2 E:1-69 iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor iron-sulfur subunit (ISP) transmembrane anchor
e1sqbE3 E:70-196 ISP domain ISP domain ISP domain
e1sqbF1 F:12-110 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqbG1 G:1-75 Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqbH1 H:13-78 cytochrome bc1 complex 11 kDa protein-like Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqbI1 I:1-57 Ubiquinol-cytochrome c reductase 8 kDa protein Ubiquinol-cytochrome c reductase 8 kDa protein Ubiquinol-cytochrome c reductase 8 kDa protein
e1sqbJ1 J:1-61 Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
e1sqbK1 K:2-53 Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Structural contacts of domain e1sqbB2 of H-group "LuxS, MPP, ThrRS/AlaRS common domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1sqbA2 B:x,y,z->A:X,Y,Z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbA1 B:x,y,z->A:X,Y,Z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbI1 B:X,Y,Z->I:x,y,z Ubiquinol-cytochrome c reductase 8 kDa protein Interaction Interface Pymol
e1sqbB1 B:x,y,z->B:-X+1,-Y+1,Z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB2 B:x,y,z->B:-X+1,-Y+1,Z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB1 B:-X+1,-Y+1,Z->B:x,y,z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB2 B:-X+1,-Y+1,Z->B:x,y,z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB2 B:x,y,z->B:X,-Y+3/2,-Z+1/4 LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB1 B:x,y,z->B:X,-Y+3/2,-Z+1/4 LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB2 B:X,-Y+3/2,-Z+1/4->B:x,y,z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB1 B:X,-Y+3/2,-Z+1/4->B:x,y,z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol
e1sqbB1 B:-Y+1,X+1/2,Z+1/4->E:x,y,z LuxS, MPP, ThrRS/AlaRS common domain Interaction Interface Pymol