Domain ID e1t05B2

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 001387788
Type: Automatic domain
Parent: e2zd1B1
Range: B:240-316
PDB: 1t05
PDB Description: POL polyprotein
UniProt: P04585
Species: Human immunodeficiency virus 1

Structure of domain e1t05B2

Domains in the same chain:

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e1t05B3 B:3-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1t05B2 B:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1t05B1 B:317-429 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e1t05A2 A:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1t05A1 A:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1t05A4 A:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1t05A3 A:431-554 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1t05B3 B:3-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1t05B2 B:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1t05B1 B:317-429 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1t05B2 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1t05A3 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e1t05B2 B:x,y,z->B:-X+Y,Y,-Z-2/3 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1t05B1 B:x,y,z->B:-X+Y,Y,-Z-2/3 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1t05B2 B:-X+Y,Y,-Z-2/3->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1t05B1 B:-X+Y,Y,-Z-2/3->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol