Domain ID e1tkzA6

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 001188205
Type: Automatic domain
Parent: e2zd1B1
Range: A:243-316
PDB: 1tkz
PDB Description: Pol polyprotein, Reverse transcriptase, Chain A
UniProt: P04585
Species: Human immunodeficiency virus 1

Structure of domain e1tkzA6

Domains in the same chain:

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e1tkzA7 A:4-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1tkzA6 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1tkzA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1tkzA8 A:429-537 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e1tkzA7 A:4-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1tkzA6 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1tkzA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1tkzA8 A:429-537 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1tkzB2 B:7-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1tkzB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1tkzB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1tkzA6 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1tkzB1 A:-X+1/2,-Y,Z-1/2->B:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e1tkzB3 A:-X+1/2,-Y,Z-1/2->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1tkzA7 A:-X,Y-1/2,-Z+1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1tkzB2 A:x,y,z->B:X-1/2,-Y-1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1tkzA7 A:-X,Y-1/2,-Z+3/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol