Domain ID e1ubjL2

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  • A: alpha complex topology
  • X: alpha-helical domain in nickel-iron hydrogenase, large subunit
  • H: alpha-helical domain in nickel-iron hydrogenase, large subunit
  • T: alpha-helical domain in nickel-iron hydrogenase, large subunit
  • F: NiFeSe_Hases
UID: 000062715
Type: Automatic domain
Parent: e1ublL3
Range: L:102-329,L:381-461
Ligands: F3S SF4
PDB: 1ubj
PDB Description: Periplasmic [NiFe] hydrogenase large subunit
UniProt: P21852
Species:

Structure of domain e1ubjL2

Domains in the same chain:

e1ubjL3 L:19-58,L:511-551 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL4 L:59-101,L:462-510 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL2 L:102-329,L:381-461 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1ubjL1 L:330-380 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e1ubjL3 L:19-58,L:511-551 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL4 L:59-101,L:462-510 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL2 L:102-329,L:381-461 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1ubjL1 L:330-380 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1ubjS2 S:1-183 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1ubjS1 S:184-266 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e1ubjL2 of H-group "alpha-helical domain in nickel-iron hydrogenase, large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ubjS2 L:x,y,z->S:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1ubjS1 L:x,y,z->S:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e1ubjS2 L:x,y,z->S:X-1/2,-Y+1/2,-Z+2 Class I glutamine amidotransferase-like Interaction Interface Pymol
e1ubjL4 L:x,y,z->L:-X+1,Y-1/2,-Z+5/2 Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1ubjL3 L:-X+1,Y-1/2,-Z+5/2->L:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1ubjL1 L:x,y,z->L:X-1/2,-Y+1/2,-Z+3 all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1ubjL3 L:x,y,z->L:X-1/2,-Y+1/2,-Z+3 Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol