ECOD: domain e1ubjL2

Domain ID e1ubjL2

A: alpha complex topology
X: alpha-helical domain in nickel-iron hydrogenase, large subunit
H: alpha-helical domain in nickel-iron hydrogenase, large subunit
T: alpha-helical domain in nickel-iron hydrogenase, large subunit
F: NiFeSe_Hases

UID:	000062715
Type:	Automatic domain
Parent:	e1ublL3
Range:	L:102-329,L:381-461
Ligands:	F3S SF4
PDB:	1ubj
PDB Description:	Periplasmic [NiFe] hydrogenase large subunit
UniProt:	P21852
Species:

Domains in the same chain:

Download Pymol

e1ubjL3	L:19-58,L:511-551	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL4	L:59-101,L:462-510	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL2	L:102-329,L:381-461	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e1ubjL1	L:330-380	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e1ubjL3	L:19-58,L:511-551	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL4	L:59-101,L:462-510	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubjL2	L:102-329,L:381-461	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e1ubjL1	L:330-380	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit	all-beta domain in nickel-iron hydrogenase large subunit
e1ubjS2	S:1-183	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e1ubjS1	S:184-266	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e1ubjL2 of H-group "alpha-helical domain in nickel-iron hydrogenase, large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ubjS2	L:x,y,z->S:X,Y,Z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1ubjS1	L:x,y,z->S:X,Y,Z	Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit	Interaction Interface Pymol
e1ubjS2	L:x,y,z->S:X-1/2,-Y+1/2,-Z+2	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e1ubjL4	L:x,y,z->L:-X+1,Y-1/2,-Z+5/2	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol
e1ubjL3	L:-X+1,Y-1/2,-Z+5/2->L:x,y,z	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol
e1ubjL1	L:x,y,z->L:X-1/2,-Y+1/2,-Z+3	all-beta domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol
e1ubjL3	L:x,y,z->L:X-1/2,-Y+1/2,-Z+3	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Interaction Interface Pymol