Domain ID e1ubuL4

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: NiFeSe_Hases
UID: 000077085
Type: Automatic domain
Parent: e1cc1L4
Range: L:59-101,L:462-510
Ligands: FNE MG SF4
PDB: 1ubu
PDB Description: PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT
UniProt: P21852
Species:

Structure of domain e1ubuL4

Domains in the same chain:

e1ubuL3 L:19-58,L:511-551 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubuL4 L:59-101,L:462-510 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubuL2 L:102-329,L:381-461 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1ubuL1 L:330-380 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Domains in the same PDB:

e1ubuL3 L:19-58,L:511-551 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubuL4 L:59-101,L:462-510 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1ubuL2 L:102-329,L:381-461 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1ubuL1 L:330-380 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1ubuS2 S:1-183 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1ubuS1 S:184-266 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Structural contacts of domain e1ubuL4 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ubuS1 L:x,y,z->S:X,Y,Z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e1ubuS2 L:x,y,z->S:X,Y,Z Class I glutamine amidotransferase-like Interaction Interface Pymol
e1ubuS1 L:-X+3/2,-Y+1,Z-1/2->S:x,y,z Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Interaction Interface Pymol
e1ubuL2 L:-X+1,Y-1/2,-Z+5/2->L:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e1ubuL3 L:x,y,z->L:-X+3/2,-Y+1,Z-1/2 Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1ubuL1 L:x,y,z->L:-X+3/2,-Y+1,Z-1/2 all-beta domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol