ECOD: domain e1ud9C2

Domain ID e1ud9C2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_C

UID:	000071098
Type:	Automatic domain
Parent:	e1iz5A2
Range:	C:127-245
Ligands:	ZN
PDB:	1ud9
PDB Description:	DNA POLYMERASE SLIDING CLAMP A
UniProt:	Q975N2
Species:	Sulfolobus tokodaii

Domains in the same chain:

Download Pymol

e1ud9C1	C:1-119	DNA clamp	DNA clamp	DNA clamp
e1ud9C2	C:127-245	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e1ud9A1	A:1-119	DNA clamp	DNA clamp	DNA clamp
e1ud9A2	A:127-245	DNA clamp	DNA clamp	DNA clamp
e1ud9B1	B:1-119	DNA clamp	DNA clamp	DNA clamp
e1ud9B2	B:127-245	DNA clamp	DNA clamp	DNA clamp
e1ud9C1	C:1-119	DNA clamp	DNA clamp	DNA clamp
e1ud9C2	C:127-245	DNA clamp	DNA clamp	DNA clamp
e1ud9D1	D:1-119	DNA clamp	DNA clamp	DNA clamp
e1ud9D2	D:127-245	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e1ud9C2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ud9B2	C:X,Y,Z-1->B:x,y,z	DNA clamp	Interaction Interface Pymol
e1ud9B1	C:X,Y,Z-1->B:x,y,z	DNA clamp	Interaction Interface Pymol
e1ud9D2	C:X,Y,Z->D:x,y,z	DNA clamp	Interaction Interface Pymol
e1ud9C1	C:x,y,z->C:-X+1,Y-1/2,-Z+1	DNA clamp	Interaction Interface Pymol
e1ud9C1	C:-X+1,Y-1/2,-Z+1->C:x,y,z	DNA clamp	Interaction Interface Pymol