| UID: | 000277612 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1jilA1 |
| Range: | B:5-322 |
| Ligands: | YSA |
| PDB: | 1vbn |
| PDB Description: | Tyrosyl-tRNA synthetase |
| UniProt: | P0AGJ9 |
| Hsap BLAST neighbor: | Q9Y2Z4 |
| Species: | Escherichia coli |
Structure of domain e1vbnB1
Domains in the same chain:
| e1vbnB1 | B:5-322 | HUP domain-like | HUP domains | HUP domains |
Domains in the same PDB:
| e1vbnA1 | A:5-322 | HUP domain-like | HUP domains | HUP domains |
| e1vbnB1 | B:5-322 | HUP domain-like | HUP domains | HUP domains |
Structural contacts of domain e1vbnB1 of H-group "HUP domains":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1vbnA1 | B:x,y,z->A:X,Y,Z | HUP domains | Interaction Interface Pymol |
| e1vbnA1 | B:x,y,z->A:-Y+2,X-Y-1,Z-1/3 | HUP domains | Interaction Interface Pymol |
| e1vbnA1 | B:x,y,z->A:-Y+1,X-Y-2,Z-1/3 | HUP domains | Interaction Interface Pymol |
| e1vbnB1 | B:x,y,z->B:-X+2,-X+Y+1,-Z+5/3 | HUP domains | Interaction Interface Pymol |
| e1vbnB1 | B:-X+2,-X+Y+1,-Z+5/3->B:x,y,z | HUP domains | Interaction Interface Pymol |
| e1vbnA1 | B:x,y,z->A:Y+1,X-2,-Z+2 | HUP domains | Interaction Interface Pymol |
| e1vbnA1 | B:x,y,z->A:-X+3,-X+Y+1,-Z+5/3 | HUP domains | Interaction Interface Pymol |
