ECOD: domain e1vdmB1

Domain ID e1vdmB1

A: a/b three-layered sandwiches
X: PRTase-like
H: PRTase-like
T: PRTase-like
F: Pribosyltran

UID:	000110517
Type:	Automatic domain
Parent:	e1nulA1
Range:	B:1-153
PDB:	1vdm
PDB Description:	PURINE PHOSPHORIBOSYLTRANSFERASE
UniProt:	O57827
Species:	Pyrococcus horikoshii

Domain
In chain context
In PDB context

Structure of domain e1vdmB1

Domains in the same chain:

Download Pymol

e1vdmB1	B:1-153	PRTase-like	PRTase-like	PRTase-like

Domains in the same PDB:

e1vdmA1	A:1-153	PRTase-like	PRTase-like	PRTase-like
e1vdmB1	B:1-153	PRTase-like	PRTase-like	PRTase-like
e1vdmC1	C:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmD1	D:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmE1	E:1-153	PRTase-like	PRTase-like	PRTase-like
e1vdmF1	F:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmG1	G:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmH1	H:1-153	PRTase-like	PRTase-like	PRTase-like
e1vdmI1	I:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmJ1	J:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmK1	K:1-152	PRTase-like	PRTase-like	PRTase-like
e1vdmL1	L:1-153	PRTase-like	PRTase-like	PRTase-like

Structural contacts of domain e1vdmB1 of H-group "PRTase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vdmA1	B:x,y,z->A:X,Y,Z	PRTase-like	Interaction Interface Pymol
e1vdmD1	B:X,Y,Z->D:x,y,z	PRTase-like	Interaction Interface Pymol
e1vdmF1	B:X,Y,Z->F:x,y,z	PRTase-like	Interaction Interface Pymol
e1vdmH1	B:X,Y,Z->H:x,y,z	PRTase-like	Interaction Interface Pymol
e1vdmE1	B:X,Y,Z->E:x,y,z	PRTase-like	Interaction Interface Pymol
e1vdmG1	B:-X+2,Y-1/2,-Z+1/2->G:x,y,z	PRTase-like	Interaction Interface Pymol
e1vdmJ1	B:X,Y,Z->J:x,y,z	PRTase-like	Interaction Interface Pymol