ECOD: domain e1vg9F1

Domain ID e1vg9F1

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Ras

UID:	000101674
Type:	Automatic domain
Parent:	e1mh1A1
Range:	F:6-176
Ligands:	GDP K MG P33
PDB:	1vg9
PDB Description:	Ras-related protein Rab-7
UniProt:	P09527
Hsap BLAST neighbor:	P51149
Species:	Rattus norvegicus

Domain
In chain context
In PDB context

Structure of domain e1vg9F1

Domains in the same chain:

Download Pymol

e1vg9F1	F:6-176	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e1vg9A4	A:2-107,A:210-442	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e1vg9A3	A:443-614	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e1vg9B1	B:6-176	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1vg9C2	C:3-106,C:211-444,C:558-615	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e1vg9C1	C:445-557	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e1vg9D1	D:6-176	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1vg9E4	E:3-107,E:210-442	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e1vg9E3	E:443-614	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e1vg9F1	F:6-176	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1vg9G2	G:3-107,G:211-442	Rossmann-like	Rossmann-related	FAD/NAD(P)-binding domain
e1vg9G4	G:443-615	FAD-linked reductases, C-terminal domain-like	FAD-linked reductases-C	FAD-linked reductases-C
e1vg9H1	H:6-176	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e1vg9F1 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vg9E4	F:x,y,z->E:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1vg9G2	F:x,y,z->G:-X+2,Y-1/2,-Z+1	Rossmann-related	Interaction Interface Pymol
e1vg9E4	F:X-1,Y,Z->E:x,y,z	Rossmann-related	Interaction Interface Pymol
e1vg9E3	F:X-1,Y,Z->E:x,y,z	FAD-linked reductases-C	Interaction Interface Pymol
e1vg9E4	F:x,y,z->E:-X+2,Y-1/2,-Z+1	Rossmann-related	Interaction Interface Pymol