ECOD: domain e1vk6A1

Domain ID e1vk6A1

A: a+b two layers
X: beta-Grasp
H: Nudix
T: Nudix
F: Unmapped domains

UID:	000006250
Type:	Manual and representative domain
Range:	A:0-96
Ligands:	MPD
PDB:	1vk6
PDB Description:	NADH pyrophosphatase
UniProt:	P32664
Species:

Domains in the same chain:

Download Pymol

e1vk6A1	A:0-96	beta-Grasp	Nudix	Nudix
e1vk6A3	A:97-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vk6A2	A:126-256	beta-Grasp	Nudix	Nudix

Domains in the same PDB:

e1vk6A1	A:0-96	beta-Grasp	Nudix	Nudix
e1vk6A3	A:97-125	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1vk6A2	A:126-256	beta-Grasp	Nudix	Nudix

Structural contacts of domain e1vk6A1 of H-group "Nudix":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vk6A3	A:x,y,z->A:X,X-Y,-Z-1/6	Rubredoxin-related	Interaction Interface Pymol
e1vk6A2	A:x,y,z->A:X,X-Y,-Z-1/6	Nudix	Interaction Interface Pymol
e1vk6A2	A:X,X-Y,-Z-1/6->A:x,y,z	Nudix	Interaction Interface Pymol
e1vk6A3	A:X,X-Y,-Z-1/6->A:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1vk6A1	A:x,y,z->A:-Y+1,-X+1,-Z+1/6	Nudix	Interaction Interface Pymol
e1vk6A3	A:x,y,z->A:-Y+1,-X+1,-Z+1/6	Rubredoxin-related	Interaction Interface Pymol
e1vk6A3	A:-Y+1,-X+1,-Z+1/6->A:x,y,z	Rubredoxin-related	Interaction Interface Pymol
e1vk6A1	A:-Y+1,-X+1,-Z+1/6->A:x,y,z	Nudix	Interaction Interface Pymol
e1vk6A1	A:x,y,z->A:-X+2,-X+Y+1,-Z+1/3	Nudix	Interaction Interface Pymol
e1vk6A2	A:x,y,z->A:-X+2,-X+Y+1,-Z+1/3	Nudix	Interaction Interface Pymol
e1vk6A1	A:-X+2,-X+Y+1,-Z+1/3->A:x,y,z	Nudix	Interaction Interface Pymol
e1vk6A2	A:-X+2,-X+Y+1,-Z+1/3->A:x,y,z	Nudix	Interaction Interface Pymol
e1vk6A2	A:X-Y+1,X,Z-1/6->A:x,y,z	Nudix	Interaction Interface Pymol