ECOD: domain e1vkfD1

Domain ID e1vkfD1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: G3P_antiterm

UID:	000093156
Type:	Automatic domain
Parent:	e1vkfA1
Range:	D:1-172
Ligands:	CIT
PDB:	1vkf
PDB Description:	glycerol uptake operon antiterminator-related protein
UniProt:	Q9X1F0
Species:

Domains in the same chain:

Download Pymol

e1vkfD1	D:1-172	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Domains in the same PDB:

e1vkfA1	A:1-172	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1vkfB1	B:1-172	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1vkfC1	C:1-172	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1vkfD1	D:1-172	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Structural contacts of domain e1vkfD1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vkfD1	D:x,y,z->D:X,-Y,-Z	TIM barrels	Interaction Interface Pymol
e1vkfD1	D:X,-Y,-Z->D:x,y,z	TIM barrels	Interaction Interface Pymol
e1vkfC1	D:x,y,z->C:X-1,Y,Z	TIM barrels	Interaction Interface Pymol
e1vkfB1	D:x,y,z->B:-X+1,Y,-Z+1/2	TIM barrels	Interaction Interface Pymol
e1vkfA1	D:x,y,z->A:-X+3/2,Y-1/2,-Z+1/2	TIM barrels	Interaction Interface Pymol
e1vkfC1	D:x,y,z->C:X,Y,Z	TIM barrels	Interaction Interface Pymol
e1vkfA1	D:x,y,z->A:X-1/2,Y-1/2,Z	TIM barrels	Interaction Interface Pymol