ECOD: domain e1vkyB1

Domain ID e1vkyB1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: barrel domain in QueA-like proteins
F: Queuosine_synth

UID:	000022006
Type:	Automatic domain
Parent:	e1vkyA1
Range:	B:63-141
PDB:	1vky
PDB Description:	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
UniProt:	Q9WZ44
Species:	Thermotoga maritima

Domain
In chain context
In PDB context

Structure of domain e1vkyB1

Domains in the same chain:

Download Pymol

e1vkyB2	B:4-62,B:142,B:174-334	a/b domain in QueA-like proteins (Pfam 02547)	a/b domain in QueA-like proteins (Pfam 02547)	a/b domain in QueA-like proteins (Pfam 02547)
e1vkyB1	B:63-141	cradle loop barrel	RIFT-related	barrel domain in QueA-like proteins

Domains in the same PDB:

e1vkyA2	A:4-63,A:174-335	a/b domain in QueA-like proteins (Pfam 02547)	a/b domain in QueA-like proteins (Pfam 02547)	a/b domain in QueA-like proteins (Pfam 02547)
e1vkyA1	A:64-142	cradle loop barrel	RIFT-related	barrel domain in QueA-like proteins
e1vkyB2	B:4-62,B:142,B:174-334	a/b domain in QueA-like proteins (Pfam 02547)	a/b domain in QueA-like proteins (Pfam 02547)	a/b domain in QueA-like proteins (Pfam 02547)
e1vkyB1	B:63-141	cradle loop barrel	RIFT-related	barrel domain in QueA-like proteins

Structural contacts of domain e1vkyB1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vkyA2	B:x,y,z->A:-X+1/2,Y-1/2,-Z+1/2	a/b domain in QueA-like proteins (Pfam 02547)	Interaction Interface Pymol