ECOD: domain e1vpsB1

Domain ID e1vpsB1

A: beta sandwiches
X: jelly-roll
H: Nucleoplasmin-like/VP (viral coat and capsid proteins)
T: Nucleoplasmin-like/VP (viral coat and capsid proteins)
F: Polyoma_coat

UID:	000030794
Type:	Automatic domain
Parent:	e1vpsA1
Range:	B:32-316
PDB:	1vps
PDB Description:	POLYOMAVIRUS VP1 PENTAMER
UniProt:	P49302
Species:	Murine polyomavirus

Domains in the same chain:

Download Pymol

e1vpsB1	B:32-316	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)

Domains in the same PDB:

e1vpsA1	A:32-316	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1vpsB1	B:32-316	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1vpsC1	C:32-316	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1vpsD1	D:32-316	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)
e1vpsE1	E:32-316	jelly-roll	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Nucleoplasmin-like/VP (viral coat and capsid proteins)

Structural contacts of domain e1vpsB1 of H-group "Nucleoplasmin-like/VP (viral coat and capsid proteins)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vpsC1	B:X,Y,Z->C:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1vpsA1	B:x,y,z->A:X,Y,Z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1vpsB1	B:x,y,z->B:X-Y+1,-Y+2,-Z+2/3	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1vpsB1	B:X-Y+1,-Y+2,-Z+2/3->B:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1vpsD1	B:X-Y+1,-Y+2,-Z-1/3->D:x,y,z	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1vpsD1	B:x,y,z->D:-Y+1,X-Y+1,Z+1/3	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol
e1vpsC1	B:x,y,z->C:-Y+1,X-Y+1,Z+1/3	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Interaction Interface Pymol