Domain ID e1vrtB3

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: RNaseH-like domain in reverse transcriptase
  • T: RNaseH-like domain in reverse transcriptase
  • F: RVT_connect
UID: 000116072
Type: Automatic domain
Parent: e2zd1B3
Range: B:316-427
PDB: 1vrt
PDB Description: HIV-1 REVERSE TRANSCRIPTASE
UniProt: P04585
Species: Human immunodeficiency virus 1

Structure of domain e1vrtB3

Domains in the same chain:

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e1vrtB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1vrtB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1vrtB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e1vrtA11 A:4-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1vrtA10 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1vrtA9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e1vrtA12 A:429-539 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vrtB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1vrtB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e1vrtB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e1vrtB3 of H-group "RNaseH-like domain in reverse transcriptase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vrtA9 B:x,y,z->A:X,Y,Z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e1vrtA12 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e1vrtA12 B:x,y,z->A:-X+1/2,-Y,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e1vrtA12 B:-X+1/2,-Y,Z-1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol