Domain ID e1vs8E2

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 001173418
Type: Automatic domain
Parent: e1dmgA1
Range: E:1-201
Ligands: MG
PDB: 1vs8
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e1vs8E2

Domains in the same chain:

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e1vs8E2 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e1vs801 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vs821 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e1vs831 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e1vs841 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e1vs8C3 C:3-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vs8C4 C:125-269 SH3 SH3 SH3
e1vs8E2 E:1-201 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vs8F1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vs8G2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vs8G1 G:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vs8H2 H:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e1vs8I3 I:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e1vs8I4 I:74-141 HTH HTH Ribosomal protein L11, C-terminal domain
e1vs8J1 J:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vs8K1 K:2-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vs8N1 N:14-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e1vs8R1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e1vs8S1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vs8T1 T:6-99 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vs8U2 U:1-102 SH3 SH3 SH3
e1vs8V1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vs8W1 W:1-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e1vs8X1 X:1-60 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vs8Y1 Y:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vs8Z1 Z:1-70 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p

Structural contacts of domain e1vs8E2 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 E:X,Y,Z->L:x,y,z Ribosomal protein L4 Interaction Interface Pymol