ECOD: domain e1vyjC2

Domain ID e1vyjC2

A: a+b two layers
X: DNA clamp
H: DNA clamp
T: DNA clamp
F: PCNA_C

UID:	000071076
Type:	Automatic domain
Parent:	e1plqA2
Range:	C:127-255
PDB:	1vyj
PDB Description:	PROLIFERATING CELL NUCLEAR ANTIGEN
UniProt:	P12004
Hsap BLAST neighbor:	P12004
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1vyjC2

Domains in the same chain:

Download Pymol

e1vyjC1	C:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjC2	C:127-255	DNA clamp	DNA clamp	DNA clamp

Domains in the same PDB:

e1vyjA1	A:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjA2	A:127-255	DNA clamp	DNA clamp	DNA clamp
e1vyjC1	C:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjC2	C:127-255	DNA clamp	DNA clamp	DNA clamp
e1vyjE1	E:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjE2	E:127-255	DNA clamp	DNA clamp	DNA clamp
e1vyjG1	G:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjG2	G:127-255	DNA clamp	DNA clamp	DNA clamp
e1vyjI1	I:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjI2	I:127-255	DNA clamp	DNA clamp	DNA clamp
e1vyjK1	K:1-126	DNA clamp	DNA clamp	DNA clamp
e1vyjK2	K:127-255	DNA clamp	DNA clamp	DNA clamp

Structural contacts of domain e1vyjC2 of H-group "DNA clamp":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1vyjA1	C:x,y,z->A:X,Y,Z	DNA clamp	Interaction Interface Pymol
e1vyjI1	C:-Y+1,X-Y+1,Z+1/3->I:x,y,z	DNA clamp	Interaction Interface Pymol
e1vyjI2	C:-Y+1,X-Y+1,Z+1/3->I:x,y,z	DNA clamp	Interaction Interface Pymol
e1vyjG2	C:-X,-X+Y,-Z+1/3->G:x,y,z	DNA clamp	Interaction Interface Pymol
e1vyjG1	C:-Y+1,X-Y+1,Z+1/3->G:x,y,z	DNA clamp	Interaction Interface Pymol
e1vyjG2	C:-Y+1,X-Y+1,Z+1/3->G:x,y,z	DNA clamp	Interaction Interface Pymol
e1vyjK1	C:-Y+1,X-Y+1,Z+1/3->K:x,y,z	DNA clamp	Interaction Interface Pymol
e1vyjK2	C:-Y+1,X-Y+1,Z+1/3->K:x,y,z	DNA clamp	Interaction Interface Pymol