Domain ID e1w88D2

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: Transket_pyr
UID: 000110885
Type: Automatic domain
Parent: e2r8oA2
Range: D:1-186
Ligands: TDP
PDB: 1w88
PDB Description: PYRUVATE DEHYDROGENASE E1 COMPONENT, BETA SUBUNIT
UniProt: P21874
Hsap BLAST neighbor: P21953
Species: Geobacillus stearothermophilus

Structure of domain e1w88D2

Domains in the same chain:

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e1w88D2 D:1-186 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88D1 D:193-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e1w88A1 A:11-366 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88B2 B:1-186 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88B1 B:193-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1w88C1 C:11-366 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88D2 D:1-186 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88D1 D:193-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1w88E1 E:11-265,E:292-366 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88F2 F:1-186 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88F1 F:193-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1w88G1 G:11-265,G:292-366 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88H2 H:1-186 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e1w88H1 H:193-324 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e1w88I1 I:128-167 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
e1w88J1 J:128-169 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex

Structural contacts of domain e1w88D2 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1w88B2 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1w88B1 D:x,y,z->B:X,Y,Z TK C-terminal domain-like Interaction Interface Pymol
e1w88C1 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1w88A1 D:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e1w88F2 D:X,Y,Z->F:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol