Domain ID e1wafB3

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: DNA_pol_B
UID: 000066009
Type: Automatic domain
Parent: e1tgoA4
Range: B:376-467,B:574-731
Ligands: GMP
PDB: 1waf
PDB Description: DNA POLYMERASE
UniProt: Q38087
Species: Enterobacteria phage RB69

Structure of domain e1wafB3

Domains in the same chain:

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e1wafB4 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1wafB3 B:376-467,B:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1wafB1 B:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1wafB2 B:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1wafA4 A:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1wafA3 A:376-467,A:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1wafA1 A:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1wafA2 A:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e1wafB4 B:1-375 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1wafB3 B:376-467,B:574-731 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1wafB1 B:468-573 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1wafB2 B:732-902 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1wafB3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1wafA4 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e1wafA2 B:x,y,z->A:X,Y,Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e1wafA2 B:x,y,z->A:-X+1,Y-1/2,-Z+1 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol