Domain ID e1wdkB4

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  • A: a/b three-layered sandwiches
  • X: ClpP/crotonase
  • H: ClpP/crotonase
  • T: ClpP/crotonase
  • F: ECH_1
UID: 000117440
Type: Automatic domain
Parent: e1mj3A1
Range: B:1-310
Ligands: N8E
PDB: 1wdk
PDB Description: Fatty oxidation complex alpha subunit
UniProt: P28793
Hsap BLAST neighbor: P40939
Species: Pseudomonas fragi

Structure of domain e1wdkB4

Domains in the same chain:

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e1wdkB4 B:1-310 ClpP/crotonase ClpP/crotonase ClpP/crotonase
e1wdkB3 B:311-496 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e1wdkB1 B:497-620 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdkB2 B:621-715 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like

Domains in the same PDB:

e1wdkA4 A:1-310 ClpP/crotonase ClpP/crotonase ClpP/crotonase
e1wdkA3 A:311-496 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e1wdkA1 A:497-620 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdkA2 A:621-715 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdkB4 B:1-310 ClpP/crotonase ClpP/crotonase ClpP/crotonase
e1wdkB3 B:311-496 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e1wdkB1 B:497-620 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdkB2 B:621-715 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdkC2 C:2-263 Thiolase-like Thiolase-like Thiolase-like
e1wdkC1 C:265-391 Thiolase-like Thiolase-like Thiolase-like
e1wdkD2 D:2-263 Thiolase-like Thiolase-like Thiolase-like
e1wdkD1 D:265-391 Thiolase-like Thiolase-like Thiolase-like

Structural contacts of domain e1wdkB4 of H-group "ClpP/crotonase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1wdkD2 B:X,Y,Z->D:x,y,z Thiolase-like Interaction Interface Pymol
e1wdkD1 B:X,Y,Z->D:x,y,z Thiolase-like Interaction Interface Pymol
e1wdkC2 B:X,Y,Z->C:x,y,z Thiolase-like Interaction Interface Pymol
e1wdkA3 B:X-1/2,Y+1/2,Z->A:x,y,z Rossmann-related Interaction Interface Pymol
e1wdkA4 B:x,y,z->A:X,Y-1,Z ClpP/crotonase Interaction Interface Pymol
e1wdkB4 B:x,y,z->B:-X+1,Y,-Z+2 ClpP/crotonase Interaction Interface Pymol
e1wdkB4 B:-X+1,Y,-Z+2->B:x,y,z ClpP/crotonase Interaction Interface Pymol