Domain ID e1wdmB4

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  • A: a/b three-layered sandwiches
  • X: ClpP/crotonase
  • H: ClpP/crotonase
  • T: ClpP/crotonase
  • F: ECH_1
UID: 000117438
Type: Automatic domain
Parent: e1mj3A1
Range: B:1-310
PDB: 1wdm
PDB Description: Fatty oxidation complex alpha subunit
UniProt: P28793
Hsap BLAST neighbor: P40939
Species: Pseudomonas fragi

Structure of domain e1wdmB4

Domains in the same chain:

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e1wdmB4 B:1-310 ClpP/crotonase ClpP/crotonase ClpP/crotonase
e1wdmB3 B:311-496 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e1wdmB1 B:497-620 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdmB2 B:621-715 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like

Domains in the same PDB:

e1wdmA4 A:1-310 ClpP/crotonase ClpP/crotonase ClpP/crotonase
e1wdmA3 A:311-496 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e1wdmA1 A:497-620 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdmA2 A:621-715 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdmB4 B:1-310 ClpP/crotonase ClpP/crotonase ClpP/crotonase
e1wdmB3 B:311-496 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e1wdmB1 B:497-620 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdmB2 B:621-715 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e1wdmC2 C:2-263 Thiolase-like Thiolase-like Thiolase-like
e1wdmC1 C:265-391 Thiolase-like Thiolase-like Thiolase-like
e1wdmD2 D:2-263 Thiolase-like Thiolase-like Thiolase-like
e1wdmD1 D:265-391 Thiolase-like Thiolase-like Thiolase-like

Structural contacts of domain e1wdmB4 of H-group "ClpP/crotonase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1wdmD1 B:X,Y,Z->D:x,y,z Thiolase-like Interaction Interface Pymol
e1wdmD2 B:X,Y,Z->D:x,y,z Thiolase-like Interaction Interface Pymol
e1wdmC2 B:X,Y,Z->C:x,y,z Thiolase-like Interaction Interface Pymol
e1wdmA3 B:X-1/2,Y+1/2,Z->A:x,y,z Rossmann-related Interaction Interface Pymol
e1wdmB4 B:x,y,z->B:-X+1,Y,-Z+2 ClpP/crotonase Interaction Interface Pymol
e1wdmB4 B:-X+1,Y,-Z+2->B:x,y,z ClpP/crotonase Interaction Interface Pymol