ECOD: domain e1x9mA2

Domain ID e1x9mA2

A: alpha bundles
X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
F: DNA_pol_A

UID:	000004197
Type:	Manual and representative domain
Range:	A:211-463
PDB:	1x9m
PDB Description:	DNA polymerase
UniProt:	P00581
Species:	Enterobacteria phage T7

Domain
In chain context
In PDB context

Structure of domain e1x9mA2

Domains in the same chain:

Download Pymol

e1x9mA4	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1x9mA2	A:211-463	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1x9mA3	A:464-491,A:615-704	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1x9mA1	A:492-614	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e1x9mA4	A:1-210	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1x9mA2	A:211-463	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e1x9mA3	A:464-491,A:615-704	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e1x9mA1	A:492-614	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I	helical bundle in Bacillus stearothermophilus-like DNA polymerase I
e1x9mB1	B:3-107	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like

Structural contacts of domain e1x9mA2 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1x9mB1	A:X,Y,Z->B:x,y,z	Thioredoxin-like	Interaction Interface Pymol
e1x9mA2	A:x,y,z->A:X,Y,Z-1	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1x9mA2	A:X,Y,Z-1->A:x,y,z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e1x9mA4	A:x,y,z->A:X-1/2,-Y+1/2,-Z	Ribonuclease H-like	Interaction Interface Pymol
e1x9mA4	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1	Ribonuclease H-like	Interaction Interface Pymol