Domain ID e1xhxB1

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B_2
UID: 000275439
Type: Automatic domain
Parent: e2py5A1
Range: B:358-422
PDB: 1xhx
PDB Description: DNA polymerase
UniProt: P03680
Species: Bacillus phage phi29

Structure of domain e1xhxB1

Domains in the same chain:

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e1xhxB4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhxB2 B:188-261,B:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhxB3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhxB1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1xhxA4 A:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhxA2 A:188-261,A:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhxA3 A:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhxA1 A:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1xhxB4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhxB2 B:188-261,B:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhxB3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhxB1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1xhxC4 C:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhxC2 C:188-261,C:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhxC3 C:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhxC1 C:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1xhxD4 D:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhxD2 D:188-261,D:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhxD3 D:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhxD1 D:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1xhxB1 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1xhxD4 B:x,y,z->D:-X-1/2,-Y,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e1xhxC2 B:X,Y,Z->C:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1xhxD2 B:x,y,z->D:-X+1/2,-Y,Z-1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol