Domain ID e1xhzD4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_2
UID: 000275466
Type: Automatic domain
Parent: e2py5A4
Range: D:5-187
PDB: 1xhz
PDB Description: DNA polymerase
UniProt: P03680
Species: Bacillus phage phi29

Structure of domain e1xhzD4

Domains in the same chain:

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e1xhzD4 D:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhzD2 D:188-261,D:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhzD3 D:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhzD1 D:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e1xhzA4 A:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhzA2 A:188-261,A:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhzA3 A:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhzA1 A:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1xhzB4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhzB2 B:188-261,B:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhzB3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhzB1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1xhzC4 C:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhzC2 C:188-261,C:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhzC3 C:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhzC1 C:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e1xhzD4 D:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xhzD2 D:188-261,D:423-575 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e1xhzD3 D:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e1xhzD1 D:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e1xhzD4 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1xhzC4 D:-X-1/2,-Y,Z-1/2->C:x,y,z Ribonuclease H-like Interaction Interface Pymol
e1xhzB1 D:-X-1/2,-Y,Z-1/2->B:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e1xhzB3 D:-X-1/2,-Y,Z-1/2->B:x,y,z insertion domain in bacteriophage phi29 DNA polymerase Interaction Interface Pymol
e1xhzB4 D:-X-1/2,-Y,Z-1/2->B:x,y,z Ribonuclease H-like Interaction Interface Pymol
e1xhzB2 D:-X-1/2,-Y,Z-1/2->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e1xhzA2 D:x,y,z->A:-X,Y-1/2,-Z+3/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol