Domain ID e1xxhJ3

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DNA_pol3_delta2
UID: 001773082
Type: Automatic domain
Parent: e1a5tA5
Range: J:1-165
Ligands: ZN
PDB: 1xxh
PDB Description: DNA POLYMERASE III, DELTA PRIME SUBUNIT
UniProt: P28631
Species: Escherichia coli

Structure of domain e1xxhJ3

Domains in the same chain:

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e1xxhJ3 J:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhJ4 J:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhJ2 J:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Domains in the same PDB:

e1xxhA3 A:1-141 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhA2 A:142-210 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhA1 A:212-338 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhB4 B:5-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhB3 B:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhB1 B:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhC4 C:3-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhC3 C:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhC1 C:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhD2 D:5-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhD3 D:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhD1 D:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhE4 E:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhE1 E:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhE3 E:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhF3 F:1-142 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhF2 F:143-211 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhF1 F:212-338 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhG4 G:5-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhG3 G:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhG1 G:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhH2 H:3-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhH3 H:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhH1 H:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhI2 I:5-178 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhI3 I:177-243 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhI1 I:243-368 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain
e1xxhJ3 J:1-165 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xxhJ4 J:166-207 Histone-like Histone-related AAA+ ATPase lid domain
e1xxhJ2 J:208-334 DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain DNA polymerase III clamp loader subunits, C-terminal domain

Structural contacts of domain e1xxhJ3 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1a5tA5 J:x,y,z->I:X,Y,Z P-loop domains-related Interaction Interface Pymol
e1xxhI1 J:x,y,z->I:X,Y,Z DNA polymerase III clamp loader subunits, C-terminal domain Interaction Interface Pymol
e1xxhI3 J:x,y,z->I:X,Y,Z Histone-related Interaction Interface Pymol
e1xxhF3 J:x,y,z->F:-X+1,Y-1/2,-Z+1/2 P-loop domains-related Interaction Interface Pymol