ECOD: domain e1y5iA5

Domain ID e1y5iA5

A: a/b three-layered sandwiches
X: Rossmann-like
H: Formate dehydrogenase/DMSO reductase, domains 2 and 3
T: Formate dehydrogenase/DMSO reductase, domains 2 and 3
F: Molybdopterin

UID:	001684053
Type:	Manual and representative domain
Range:	A:221-581
Ligands:	6MO MD1 SF4
PDB:	1y5i
PDB Description:	Respiratory nitrate reductase 1 alpha chain
UniProt:	P09152
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1y5iA5

Domains in the same chain:

Download Pymol

e1y5iA3	A:1-105	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e1y5iA4	A:106-220,A:582-1074	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1y5iA5	A:221-581	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1y5iA1	A:1075-1244	cradle loop barrel	RIFT-related	double psi

Domains in the same PDB:

e1y5iA3	A:1-105	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e1y5iA4	A:106-220,A:582-1074	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1y5iA5	A:221-581	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e1y5iA1	A:1075-1244	cradle loop barrel	RIFT-related	double psi
e1y5iB2	B:1-183,B:244-509	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e1y5iB3	B:184-243	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e1y5iC1	C:1-225	Transmembrane heme-binding four-helical bundle	Transmembrane heme-binding four-helical bundle	Respiratory nitrate reductase 1 gamma chain

Structural contacts of domain e1y5iA5 of H-group "Formate dehydrogenase/DMSO reductase, domains 2 and 3":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1y5iB2	A:X,Y,Z->B:x,y,z	4Fe-4S ferredoxin	Interaction Interface Pymol
e1y5iB2	A:X-1/2,-Y-1/2,-Z->B:x,y,z	4Fe-4S ferredoxin	Interaction Interface Pymol
e1y5iA4	A:-X-3/2,-Y-1/2,Z-1/2->A:x,y,z	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Interaction Interface Pymol