| UID: | 001117311 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1y5iB2 |
| Range: | B:1-183,B:244-509 |
| Ligands: | HEM SF4 |
| PDB: | 1y5l |
| PDB Description: | Respiratory nitrate reductase 1 beta chain |
| UniProt: | P11349 |
| Species: | Escherichia coli |
Structure of domain e1y5lB1
Domains in the same chain:
| e1y5lB1 | B:1-183,B:244-509 | 4Fe-4S ferredoxin | 4Fe-4S ferredoxin | 4Fe-4S ferredoxin |
| e1y5lB2 | B:184-243 | 4Fe-4S ferredoxin | 4Fe-4S ferredoxin | 4Fe-4S ferredoxin |
Domains in the same PDB:
Structural contacts of domain e1y5lB1 of H-group "4Fe-4S ferredoxin":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1y5lA1 | B:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e1y5lA4 | B:x,y,z->A:X,Y,Z | Formate dehydrogenase/DMSO reductase, domains 2 and 3 | Interaction Interface Pymol |
| e1y5lA3 | B:x,y,z->A:X,Y,Z | Formate dehydrogenase/DMSO reductase, domains 2 and 3 | Interaction Interface Pymol |
| e1y5lA2 | B:x,y,z->A:X,Y,Z | Formate dehydrogenase/DMSO reductase, domain 1 | Interaction Interface Pymol |
| e1y5lC1 | B:X,Y,Z->C:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1y5lB1 | B:x,y,z->B:-X-2,Y,-Z-1/2 | 4Fe-4S ferredoxin | Interaction Interface Pymol |
| e1y5lB2 | B:x,y,z->B:-X-2,Y,-Z-1/2 | 4Fe-4S ferredoxin | Interaction Interface Pymol |
| e1y5lB2 | B:-X-2,Y,-Z-1/2->B:x,y,z | 4Fe-4S ferredoxin | Interaction Interface Pymol |
| e1y5lB1 | B:-X-2,Y,-Z-1/2->B:x,y,z | 4Fe-4S ferredoxin | Interaction Interface Pymol |
| e1y5lA4 | B:x,y,z->A:-X-2,Y,-Z-1/2 | Formate dehydrogenase/DMSO reductase, domains 2 and 3 | Interaction Interface Pymol |
| e1y5lA2 | B:x,y,z->A:-X-2,Y,-Z-1/2 | Formate dehydrogenase/DMSO reductase, domain 1 | Interaction Interface Pymol |
| e1y5lC1 | B:-X-2,Y,-Z-1/2->C:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1y5lA3 | B:x,y,z->A:X-1/2,-Y-1/2,-Z | Formate dehydrogenase/DMSO reductase, domains 2 and 3 | Interaction Interface Pymol |
| e1y5lA4 | B:x,y,z->A:X-1/2,-Y-1/2,-Z | Formate dehydrogenase/DMSO reductase, domains 2 and 3 | Interaction Interface Pymol |
| e1y5lC1 | B:X,-Y,-Z->C:x,y,z | Transmembrane heme-binding four-helical bundle | Interaction Interface Pymol |
| e1y5lA4 | B:-X-3/2,-Y-1/2,Z-1/2->A:x,y,z | Formate dehydrogenase/DMSO reductase, domains 2 and 3 | Interaction Interface Pymol |
