| UID: | 000011038 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:3-127 |
| Ligands: | CL SO4 |
| PDB: | 1y88 |
| PDB Description: | HYPOTHETICAL PROTEIN AF1548 |
| UniProt: | O28724 |
| Species: | Archaeoglobus fulgidus |
Structure of domain e1y88A2
Domains in the same chain:
| e1y88A2 | A:3-127 | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease-like |
| e1y88A1 | A:128-186 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Domains in the same PDB:
| e1y88A2 | A:3-127 | Restriction endonuclease-like | Restriction endonuclease-like | Restriction endonuclease-like |
| e1y88A1 | A:128-186 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Structural contacts of domain e1y88A2 of H-group "Restriction endonuclease-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1y88A2 | A:x,y,z->A:Y,X,-Z | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:Y,X,-Z->A:x,y,z | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:x,y,z->A:-X+Y+1,Y,-Z+1/2 | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A1 | A:x,y,z->A:-X+Y+1,Y,-Z+1/2 | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1y88A2 | A:-X+Y+1,Y,-Z+1/2->A:x,y,z | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A1 | A:-X+Y+1,Y,-Z+1/2->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1y88A1 | A:x,y,z->A:-X+Y+1,Y,-Z-1/2 | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1y88A1 | A:-X+Y+1,Y,-Z-1/2->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1y88A1 | A:x,y,z->A:-Y+1,X-Y,Z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e1y88A2 | A:x,y,z->A:-Y+1,X-Y,Z | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:-Y+1,X-Y,Z->A:x,y,z | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:x,y,z->A:-Y+1,-X+1,-Z-1/2 | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:-Y+1,-X+1,-Z-1/2->A:x,y,z | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:x,y,z->A:-X+1,-Y+1,Z-1/2 | Restriction endonuclease-like | Interaction Interface Pymol |
| e1y88A2 | A:-X+1,-Y+1,Z-1/2->A:x,y,z | Restriction endonuclease-like | Interaction Interface Pymol |
