ECOD: domain e1y8qD1

Domain ID e1y8qD1

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: Activating enzymes of the ubiquitin-like proteins
F: ThiF

UID:	001878281
Type:	Automatic domain
Parent:	e1y8qB1
Range:	D:4-167,D:383-444
Ligands:	ATP MG ZN
PDB:	1y8q
PDB Description:	Ubiquitin-like 2 activating enzyme E1B
UniProt:	Q9UBT2
Hsap BLAST neighbor:	Q9UBT2
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e1y8qD1

Domains in the same chain:

Download Pymol

e1y8qD1	D:4-167,D:383-444	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8qD2	D:168-218,D:240-382	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8qD3	D:445-550	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1

Domains in the same PDB:

e1y8qA2	A:10-179,A:203-345	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8qB1	B:6-167,B:383-444	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8qB2	B:168-382	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8qB3	B:445-550	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1
e1y8qC1	C:9-177,C:204-345	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8qD1	D:4-167,D:383-444	Rossmann-like	Rossmann-related	Activating enzymes of the ubiquitin-like proteins
e1y8qD2	D:168-218,D:240-382	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme	Catalytic cysteine domain in ubiquitin-activating enzyme
e1y8qD3	D:445-550	beta-Grasp	E2-binding domain of E1	E2-binding domain of E1

Structural contacts of domain e1y8qD1 of H-group "Rossmann-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1y8qC1	D:x,y,z->C:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1y8qC1	D:x,y,z->C:-X,Y-1/2,-Z	Rossmann-related	Interaction Interface Pymol
e1y8qB2	D:X-1,Y,Z->B:x,y,z	Catalytic cysteine domain in ubiquitin-activating enzyme	Interaction Interface Pymol